Home / cuhk-aim-group / neurodiscovery · skills/dwi-skill/SKILL.md · GitHub

dwi-skill skillB

dwi-skill is agent-read markdown (skill) from cuhk-aim-group/neurodiscovery: Use this skill whenever the user wants to preprocess diffusion MRI / DWI data, compute diffusion metrics (FA/MD/AD/RD, etc.), extract ROI-wise diffusion features, or run tractography/connectome-related workflows. Triggers include: 'DWI', 'DTI', 'diffusion MRI', 'FA', 'MD', 'AD', 'RD', 'eddy', 'topup', 'QSIPrep', 'tractography', 'connectome', 'TBSS', 'white matter microstructure'. This is the NeuroClaw modality-layer interface: it plans WHAT to do and delegates execution to tool skills..

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What the file says

# DWI Skill (Modality Layer)

## Overview
`dwi-skill` is the NeuroClaw **modality-layer** interface skill responsible for diffusion MRI (DWI/DTI) preprocessing and feature extraction.

It strictly follows NeuroClaw hierarchical design principles:
- This skill defines **WHAT needs to be done** and **which tool skill to delegate to**.
- It contains **no implementation code** and **no concrete shell commands**.
- All concrete execution is delegated to tool skills and routed through `claw-shell`.- Reference implementations (MATLAB, Python) are provided for user understanding but should be wrapped via tool skills in production workflows.
**Core workflow (never bypassed):**
1. Identify input type (DICOM / NIfTI / BIDS), single-shell vs multi-shell, reverse phase-encoded b0/fieldmaps availability.
2. Generate a **numbered execution plan** (steps, tools, outputs, runtime, risks).
3. Present the plan and wait for explicit user confirmation (“YES” / “execute” / “proceed”).
4. On confirmation, delegate each step to the relevant tool skill via `claw-shell`.
5. Save outputs into `dwi_output/`.
…

Read the whole file at its exact version.

How to install

Latest version
mdr add cuhk-aim-group/neurodiscovery/dwi-skill@git:20260506.86420c0
Exact content
mdr add cuhk-aim-group/neurodiscovery/dwi-skill@sha256:13ccfa76ed2db0fd

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Versions

versioncommittedcommitsizeaudit
git:20260506.86420c0 latest2026-05-06 86420c0 22,740 BB view · diff
git:20260505.e9ddd222026-05-05 e9ddd22 22,748 BB view · diff
git:20260430.becfb092026-04-30 becfb09 22,587 BB view · diff
git:20260407.c40d70f2026-04-07 c40d70f 15,799 BB view

Audit of the latest version

B  16 of 17 checks passed. Deterministic, no model, same answer every run.
  • fail: No curl or wget piped into a shell (matched: curl -Ls https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/getfsl.sh | sh)
  • pass: Frontmatter block present
  • pass: Frontmatter declares a name
  • pass: Frontmatter declares a description
  • pass: Size between 200 bytes and 200 KB (22740 bytes)
  • pass: No zero-width or bidi control characters
  • pass: No instruction hidden inside an HTML comment
  • pass: No link to an exfiltration or paste host
  • pass: No credential-shaped string
  • pass: No instruction to send local credentials anywhere
  • pass: No text hidden with inline styles
  • pass: No prompt-injection phrasing
  • pass: No recursive delete of root, home or parent
  • pass: No instruction to read or print local credentials
  • pass: No base64 blob over 200 characters
  • pass: No link to a raw IP address
  • pass: No script tag

Source

GitHub

cuhk-aim-group/neurodiscovery · 91 stars · license MIT · pushed 2026-09-22 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_3jedpy3a4gdh2zsz
GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/dwi-skill
GET https://markdownregistry.com/api/v1/blob/13ccfa76ed2db0fd521ce76578fdccc0d09c2021aac292addca153f2f852607e

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