cobre-skill skillA
cobre-skill is agent-read markdown (skill) from cuhk-aim-group/neurodiscovery: Use this skill whenever the user wants an end-to-end workflow for the COBRE dataset, including download, BIDS organization, and processing of sMRI and rs-fMRI data for schizophrenia research. Triggers include: 'COBRE', 'process COBRE', 'COBRE schizophrenia', 'COBRE fMRI', or any request to run the COBRE pipeline. This is the NeuroClaw dataset-orchestration layer for COBRE..
Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.
What the file says
# COBRE Skill (Dataset-Orchestration Layer) ## Overview `cobre-skill` is the NeuroClaw orchestration skill for the **COBRE (Center for Biomedical Research Excellence)** dataset. COBRE contains 147 participants: 72 schizophrenia patients and 75 healthy controls, with T1w structural and rs-fMRI data. It is commonly used as a benchmark for brain disorder classification. It coordinates a fixed three-phase workflow: 1. Download COBRE data from the FCP/INDI repository. 2. Prepare and validate BIDS-style data organization for downstream processing. 3. Delegate modality pipelines to `smri-skill` and `fmri-skill`. It also provides **phenotype extraction** and **QC integration** paths: - Extract COBRE phenotype data (diagnosis, demographics, handedness). - Generate per-subject QC summaries with exclusion lists. This skill follows NeuroClaw hierarchy: - Defines **WHAT to do**, not low-level implementation details. - Does **not** execute direct shell commands itself. - Delegates all execution via `claw-shell` to base/tool skills. **Research use only.** --- ## Download Stage (Mandatory First Step) ### Source COBRE data is distributed through the **FCP/INDI** repository: …
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How to install
mdr add cuhk-aim-group/neurodiscovery/cobre-skill@git:20260505.e9ddd22mdr add cuhk-aim-group/neurodiscovery/cobre-skill@sha256:447367e5080e11e9Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.
[](https://markdownregistry.com/a/art_ac2mpdxg3huhs3pb)
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Source
cuhk-aim-group/neurodiscovery · 91 stars · license MIT · pushed 2026-09-22 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_ac2mpdxg3huhs3pb GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/cobre-skill GET https://markdownregistry.com/api/v1/blob/447367e5080e11e9d6f0383ff84cae5d002a3c6c38632b34948f1aa08d191084
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