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cobre-skill SKILL.md skillA

cobre-skill from cuhk-aim-group/neurodiscovery is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned

mdr add cuhk-aim-group/neurodiscovery/cobre-skill@git:20261023.f74c2bd

Pins git:20261023.f74c2bd in mdr.lock. Pin the fingerprint instead.

Audit grade: A, 17 of 17 checks passed
Kind: SKILL.md skill
Repository: cuhk-aim-group/neurodiscovery
Path: skills/cobre-skill/SKILL.md
Versions recorded: 2
Latest version: git:20261023.f74c2bd, committed Oct 23, 2026
First version recorded: May 5, 2026
Size: 7,510 bytes
Repository stars: 93
License: MIT

Use this skill whenever the user wants an end-to-end workflow for the COBRE dataset, including download, BIDS organization, and processing of sMRI and rs-fMRI data for schizophrenia research. Triggers include: 'COBRE', 'process COBRE', 'COBRE schizophrenia', 'COBRE fMRI', or any request to run the COBRE pipeline. This is the NeuroRuntime dataset-orchestration layer for COBRE.

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# COBRE Skill (Dataset-Orchestration Layer)

## Overview
`cobre-skill` is the NeuroRuntime orchestration skill for the **COBRE (Center for Biomedical Research Excellence)** dataset.

COBRE contains 147 participants: 72 schizophrenia patients and 75 healthy controls, with T1w structural and rs-fMRI data. It is commonly used as a benchmark for brain disorder classification.

It coordinates a fixed three-phase workflow:
1. Download COBRE data from the FCP/INDI repository.
2. Prepare and validate BIDS-style data organization for downstream processing.
3. Delegate modality pipelines to `smri-skill` and `fmri-skill`.

It also provides **phenotype extraction** and **QC integration** paths:
- Extract COBRE phenotype data (diagnosis, demographics, handedness).
- Generate per-subject QC summaries with exclusion lists.

This skill follows NeuroRuntime hierarchy:
- Defines **WHAT to do**, not low-level implementation details.
- Does **not** execute direct shell commands itself.
- Delegates all execution via `claw-shell` to base/tool skills.

**Research use only.**

---

## Download Stage (Mandatory First Step)

### Source
COBRE data is distributed through the **FCP/INDI** repository:
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint

mdr add cuhk-aim-group/neurodiscovery/cobre-skill@sha256:bba40f7ce0b6b138

The line at the top of this page pins the label git:20261023.f74c2bd, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

[![mdr](https://markdownregistry.com/badge/art_ac2mpdxg3huhs3pb.svg)](https://markdownregistry.com/a/art_ac2mpdxg3huhs3pb)

4 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 2 versions of this file, between May 5, 2026 and Oct 23, 2026, about one every 170 days.

version	committed	commit	size	audit
git:20261023.f74c2bd latest	2026-10-23	f74c2bd	7,510 B	A	view · diff
git:20260505.e9ddd22	2026-05-05	e9ddd22	7,501 B	A	view

Audit of the latest version

A 17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.

pass: Frontmatter block present
pass: Frontmatter declares a name
pass: Frontmatter declares a description
pass: Size between 200 bytes and 200 KB (7510 bytes)
pass: No zero-width or bidi control characters
pass: No instruction hidden inside an HTML comment
pass: No link to an exfiltration or paste host
pass: No credential-shaped string
pass: No instruction to send local credentials anywhere
pass: No text hidden with inline styles
pass: No prompt-injection phrasing
pass: No curl or wget piped into a shell
pass: No recursive delete of root, home or parent
pass: No instruction to read or print local credentials
pass: No base64 blob over 200 characters
pass: No link to a raw IP address
pass: No script tag

Source

GitHub

cuhk-aim-group/neurodiscovery · 93 stars · license MIT · pushed 2026-10-23 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_ac2mpdxg3huhs3pb
GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/cobre-skill
GET https://markdownregistry.com/api/v1/blob/bba40f7ce0b6b1387a6709daefe8965cae134ab43acc14a7436547149e0a1ea0

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.