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smri-skill SKILL.md skillA

smri-skill from cuhk-aim-group/neurodiscovery is an agent skill: a SKILL.md folder an AI agent loads when a task calls for it.

Install it, pinned

mdr add cuhk-aim-group/neurodiscovery/smri-skill@git:20260506.86420c0

Pins git:20260506.86420c0 in mdr.lock. Pin the fingerprint instead.

Audit grade: A, 17 of 17 checks passed
Kind: SKILL.md skill
Repository: cuhk-aim-group/neurodiscovery
Path: skills/smri-skill/SKILL.md
Versions recorded: 5
Latest version: git:20260506.86420c0, committed May 6, 2026
First version recorded: Apr 4, 2026
Size: 17,635 bytes
Repository stars: 93
License: MIT

Use this skill whenever the user wants to process structural MRI (sMRI) such as T1w/T2w/FLAIR for brain extraction, bias correction, tissue segmentation (GM/WM/CSF), registration to MNI, cortical/subcortical parcellation, cortical thickness/volumetry (FreeSurfer), HCP-style structural preprocessing, WMH lesion segmentation (FLAIR+T1), ROI-wise feature extraction, or converting results back to DICOM. This is the NeuroClaw modality-layer interface: it plans WHAT to do and delegates execution to…

Collected from public GitHub. Every version is saved exactly as it was and never changes. Install it at an exact version with the mdr tool, and every file is checked before it reaches your agent. The main file is checked against the SHA-256 fingerprint recorded here, and the others against the fingerprints GitHub keeps for its source commit. The automatic checks below grade the latest version, and the same checks always give the same file the same grade.

What the file says

# sMRI Skill (Modality Layer)

## Overview
`smri-skill` is the NeuroClaw **modality-layer** interface skill responsible for **structural MRI** processing (T1w/T2w/FLAIR) and feature extraction.

It strictly follows NeuroClaw hierarchical design principles:
- This skill describes **WHAT needs to be done** and **which tool skill to delegate to**.
- It contains **no implementation code** and **no direct shell commands**.
- All concrete execution is delegated to tool skills and routed through `claw-shell`.

**Core workflow (never bypassed):**
1. Identify input type (DICOM / NIfTI / BIDS), modalities available (T1w only vs T1w+T2w vs T1w+FLAIR).
2. Generate a **numbered execution plan** (steps, tools, outputs, runtime, risks).
3. Present the plan and wait for explicit user confirmation (“YES” / “execute” / “proceed”).
4. On confirmation, delegate each step via `claw-shell`.
5. Save outputs into a clean folder structure (`smri_output/`).

## Benchmark-Facing Default Mainline

For benchmark-style structural MRI tasks, start from the narrowest valid anatomical mainline and only add optional branches when the prompt or inputs explicitly require them.
…

Read the whole file at its exact version.

How to install

The exact contents, by fingerprint

mdr add cuhk-aim-group/neurodiscovery/smri-skill@sha256:c19a336e77313736

The line at the top of this page pins the label git:20260506.86420c0, which is what most people want. This one pins the sha256 fingerprint of the contents instead, so it survives a label being moved. Either way the exact version is written to mdr.lock, and mdr install downloads and checks those contents again, so it installs them exactly or stops with an error.

Badge

[![mdr](https://markdownregistry.com/badge/art_hij7q63ij74icax6.svg)](https://markdownregistry.com/a/art_hij7q63ij74icax6)

3 badge image fetches in 30 days. What the badge shows.

Versions

The registry has recorded 5 versions of this file, between Apr 4, 2026 and May 6, 2026, about one every 8 days.

version	committed	commit	size	audit
git:20260506.86420c0 latest	2026-05-06	86420c0	17,635 B	A	view · diff
git:20260505.e9ddd22	2026-05-05	e9ddd22	17,643 B	A	view · diff
git:20260430.becfb09	2026-04-30	becfb09	17,461 B	A	view · diff
git:20260407.c40d70f	2026-04-07	c40d70f	16,444 B	A	view · diff
git:20260404.fa7f354	2026-04-04	fa7f354	16,444 B	A	view

Audit of the latest version

A 17 of 17 checks passed. Fixed automatic checks with no AI involved, so the same checks give the same answer every run.

pass: Frontmatter block present
pass: Frontmatter declares a name
pass: Frontmatter declares a description
pass: Size between 200 bytes and 200 KB (17635 bytes)
pass: No zero-width or bidi control characters
pass: No instruction hidden inside an HTML comment
pass: No link to an exfiltration or paste host
pass: No credential-shaped string
pass: No instruction to send local credentials anywhere
pass: No text hidden with inline styles
pass: No prompt-injection phrasing
pass: No curl or wget piped into a shell
pass: No recursive delete of root, home or parent
pass: No instruction to read or print local credentials
pass: No base64 blob over 200 characters
pass: No link to a raw IP address
pass: No script tag

Source

GitHub

cuhk-aim-group/neurodiscovery · 93 stars · license MIT · pushed 2026-10-23 · branch main

API

GET https://markdownregistry.com/api/v1/artifacts/art_hij7q63ij74icax6
GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/smri-skill
GET https://markdownregistry.com/api/v1/blob/c19a336e77313736c83779a998cd323ce7ade8289f8bfbd0969adb409f2a345c

Your AI assistant does the legwork. You hear about the deals worth your word. Hand yours the standing instructions at modelranch.com and it joins the network that reads files like this one.

Guides: the SKILL.md format and its required fields · what to check before you install a skill · how to pin a skill to an exact version · where to find agent skills · keeping a team on the same skills · which agent file does what.