brain-visualization skillA
brain-visualization is agent-read markdown (skill) from cuhk-aim-group/neurodiscovery: Use this skill whenever the user wants to visualize neuroimaging analysis results, including 3D brain connectivity networks, atlas-based regional activation summaries, or FreeSurfer cortical surface meshes with anatomical colors. Triggers include: 'brain visualization', 'visualize connectome', '3D brain network', 'zALFF visualization', 'brain activation map', 'FreeSurfer PLY export', 'surface mesh rendering', or any request to turn neuroimaging outputs into interpretable figures or 3D models..
Indexed from public GitHub and served as immutable, content-addressed versions. Install it pinned to an exact SHA-256 with the mdr CLI, and every file is verified against the hash recorded here before it reaches your agent. The deterministic audit below grades the latest version, and the same file always earns the same grade.
What the file says
# Brain Visualization ## Overview `brain-visualization` is the NeuroClaw skill for turning processed neuroimaging outputs into publication-friendly figures and 3D assets. It focuses on three common visualization tasks drawn from the methods demonstrated in the referenced rs-fMRI tutorial: - 3D brain connectivity visualization from atlas coordinates and ROI-to-ROI connectivity matrices - atlas-based brain region activation ranking and coordinate export from zALFF-like volumetric maps - FreeSurfer cortical surface export to colored PLY meshes for downstream 3D rendering This skill is intended for analysis outputs that already exist. It does not replace preprocessing or statistical modeling skills such as `fmri-skill`, `nilearn-tool`, `freesurfer-tool`, or `fsl-tool`. ## Agent Reference Rule When implementing or adapting visualization workflows, the agent should first consult the curated reference snippets in `skills/brain-visualization/scripts/` instead of copying directly from the tutorial scripts with hard-coded paths. Reference snippets available: - `scripts/connectome_reference.py` -> atlas coordinate extraction + strongest-edge connectome plotting …
Read the whole file at its exact version.
How to install
mdr add cuhk-aim-group/neurodiscovery/brain-visualization@git:20260506.86420c0mdr add cuhk-aim-group/neurodiscovery/brain-visualization@sha256:f087217db4ebdcd0Pin to a label to follow the author's releases, or to a sha256 to freeze the exact bytes forever. Either way the resolved hash is written to mdr.lock, and mdr install reproduces it on any machine.
[](https://markdownregistry.com/a/art_y27hbnn74d3vfe25)
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Versions
| version | committed | commit | size | audit | |
|---|---|---|---|---|---|
| git:20260506.86420c0 latest | 2026-05-06 | 86420c0 | 8,025 B | A | view · diff |
| git:20260505.e9ddd22 | 2026-05-05 | e9ddd22 | 8,037 B | A | view · diff |
| git:20260413.5f89017 | 2026-04-13 | 5f89017 | 7,957 B | A | view |
Audit of the latest version
- pass: Frontmatter block present
- pass: Frontmatter declares a name
- pass: Frontmatter declares a description
- pass: Size between 200 bytes and 200 KB (8025 bytes)
- pass: No zero-width or bidi control characters
- pass: No instruction hidden inside an HTML comment
- pass: No link to an exfiltration or paste host
- pass: No credential-shaped string
- pass: No instruction to send local credentials anywhere
- pass: No text hidden with inline styles
- pass: No prompt-injection phrasing
- pass: No curl or wget piped into a shell
- pass: No recursive delete of root, home or parent
- pass: No instruction to read or print local credentials
- pass: No base64 blob over 200 characters
- pass: No link to a raw IP address
- pass: No script tag
Source
cuhk-aim-group/neurodiscovery · 91 stars · license MIT · pushed 2026-09-22 · branch main
API
GET https://markdownregistry.com/api/v1/artifacts/art_y27hbnn74d3vfe25 GET https://markdownregistry.com/api/v1/resolve?ref=cuhk-aim-group/neurodiscovery/brain-visualization GET https://markdownregistry.com/api/v1/blob/f087217db4ebdcd041ff2e958cd14e7895cf84389d050a3bf152c0dc60370f63
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